PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG541100.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 264aa    MW: 29848.4 Da    PI: 6.857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG541100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.4e-063483154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         +++ ++erE+r Rd+ N+ f eL  +l ++     + + Ka iL  +++ +k+L
  Pavir.2KG541100.2.p 34 KKVHKSEREKRKRDKQNDLFGELGNMLEPD----RQNNGKACILSDTTRMLKDL 83
                         678899**********************97....57788999999999988877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-1230101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1030104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.41E-43188No hitNo description
PROSITE profilePS5088811.2933383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-53483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVPRDKAHSA GRAPTENLIQ RPVLNNKCEK KAPKKVHKSE REKRKRDKQN DLFGELGNML  60
EPDRQNNGKA CILSDTTRML KDLLSQVESL RQENGSLKNE SRYVALERNE LLDENNMIRN  120
EISELQNELR MRMEGNPIWS HDATRSNLTA AHPHTTVFVL QHSPHPPVIA TMAPPLQQLE  180
VLEQSYTTSR RELQLFPEAA STEDTEPQQD QGISNHVTRP QARYATRMTT LPAHVYPVLQ  240
RMEDEQCSSG TTGSGDEGAI CNH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.203990.0callus| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463230.11e-151hypothetical protein SORBIDRAFT_02g040140
TrEMBLC5X3661e-151C5X366_SORBI; Putative uncharacterized protein Sb02g040140
STRINGSb02g040140.11e-151(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-31bHLH family protein